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<li class="navelem"><a class="el" href="dir_3dc1dabd28ba78e072d14d3fcfc90454.html">SPHINXsys</a></li><li class="navelem"><a class="el" href="dir_48ea983704c43b6d88c1fa3f4d09e369.html">src</a></li><li class="navelem"><a class="el" href="dir_0a0d9ef1793521534f0094f317758287.html">shared</a></li><li class="navelem"><a class="el" href="dir_05f659066ce4fa1dc9c19bd298f55a53.html">particle_dynamics</a></li><li class="navelem"><a class="el" href="dir_208f8e9dfef2048ad5068f9fd6b43344.html">electro_physiology</a></li>  </ul>
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<div class="title">electro_physiology.h File Reference</div>  </div>
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<p>In is file, we declaim the dynamics relevant to electrophysiology, including diffusion, reaction and muscle activation.  
<a href="#details">More...</a></p>
<div class="textblock"><code>#include &quot;<a class="el" href="particle__dynamics__diffusion__reaction_8h_source.html">particle_dynamics_diffusion_reaction.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="solid__particles_8h_source.html">solid_particles.h</a>&quot;</code><br />
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<p><a href="electro__physiology_8h_source.html">Go to the source code of this file.</a></p>
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Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_electro_physiology_reaction.html">SPH::ElectroPhysiologyReaction</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_aliev_panfilow_model.html">SPH::AlievPanfilowModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">The simplest Electrophysiology Reaction model, which reduces the complex of array of ion currents to two variables that describe excitation and recovery.  <a href="class_s_p_h_1_1_aliev_panfilow_model.html#details">More...</a><br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_mono_field_electro_physiology.html">SPH::MonoFieldElectroPhysiology</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">material class for electro_physiology.  <a href="class_s_p_h_1_1_mono_field_electro_physiology.html#details">More...</a><br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_local_mono_field_electro_physiology.html">SPH::LocalMonoFieldElectroPhysiology</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">material class for electro_physiology with locally oriented fibers.  <a href="class_s_p_h_1_1_local_mono_field_electro_physiology.html#details">More...</a><br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_electro_physiology_particles.html">SPH::ElectroPhysiologyParticles</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A group of particles with electrophysiology particle data.  <a href="class_s_p_h_1_1_electro_physiology_particles.html#details">More...</a><br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1_electro_physiology_reduced_particles.html">SPH::ElectroPhysiologyReducedParticles</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A group of reduced particles with electrophysiology particle data.  <a href="class_s_p_h_1_1_electro_physiology_reduced_particles.html#details">More...</a><br /></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_initial_condition.html">SPH::electro_physiology::ElectroPhysiologyInitialCondition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">set initial condition for a muscle body This is a abstract class to be override for case specific initial conditions.  <a href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_initial_condition.html#details">More...</a><br /></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_get_electro_physiology_time_step_size.html">SPH::electro_physiology::GetElectroPhysiologyTimeStepSize</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computing the time step size from diffusion criteria.  <a href="class_s_p_h_1_1electro__physiology_1_1_get_electro_physiology_time_step_size.html#details">More...</a><br /></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_diffusion_relaxation_inner.html">SPH::electro_physiology::ElectroPhysiologyDiffusionRelaxationInner</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the diffusion relaxation process.  <a href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_diffusion_relaxation_inner.html#details">More...</a><br /></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_diffusion_relaxation_complex.html">SPH::electro_physiology::ElectroPhysiologyDiffusionRelaxationComplex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the diffusion relaxation process.  <a href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_diffusion_relaxation_complex.html#details">More...</a><br /></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_reaction_relaxation_forward.html">SPH::electro_physiology::ElectroPhysiologyReactionRelaxationForward</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solve the reaction ODE equation of trans-membrane potential using forward sweeping.  <a href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_reaction_relaxation_forward.html#details">More...</a><br /></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_electro_physiology_reaction_relaxation_backward.html">SPH::electro_physiology::ElectroPhysiologyReactionRelaxationBackward</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_s_p_h_1_1electro__physiology_1_1_apply_stimulus_currents.html">SPH::electro_physiology::ApplyStimulusCurrents</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Apply specific stimulus currents This is a abstract class to be override for case specific implementations.  <a href="class_s_p_h_1_1electro__physiology_1_1_apply_stimulus_currents.html#details">More...</a><br /></td></tr>
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typedef DiffusionReactionSimpleData&lt; RealBody, SolidParticles, Solid &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>SPH::electro_physiology::ElectroPhysiologyDataDelegateSimple</b></td></tr>
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typedef DiffusionReactionInnerData&lt; RealBody, SolidParticles, Solid &gt;&#160;</td><td class="memItemRight" valign="bottom"><b>SPH::electro_physiology::ElectroPhysiologyDataDelegateInner</b></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>In is file, we declaim the dynamics relevant to electrophysiology, including diffusion, reaction and muscle activation. </p>
<dl class="section author"><dt>Author</dt><dd>Chi Zhang and Xiangyu Hu </dd></dl>
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